Journal

• Acta Crystallographica Section D
• Achives of Biochemistry and Biophysics
• ASBMB online journals (JBC, TiBS)
• ASM online journals (J. Bact., etc.)
• BBA-Protein structure & Molecular enzymology
• Biochemical and Biophysical Research Comm
• Biochemical Journal
• Biochemistry
• Biolphysical Journal
• Biotechnology & Bioengineering
• Cell
• Current Opinion
• Current Biology
• EMBO Journal
• European Journal of Biochemistry
• FASEB Journal
• FEBS LETTERS
• Journal of Cell Biology
• Journal of Bacteriology
• Journal of Biochemistry
• Journal of Biological Chemistry
• Journal of Molecular Biology
• Journal of Neuroscience
• Journal of Structural Biology
• Molecular & Cellular Biology
• Molecular Biology of the Cell
• Molecular Cell
• Nature
• Nature Biotechnology
• Nature Genetics
• Nature Structural & Molecular Biology
• Neuron
• Neuroscience
• Nucleic Acid Research
• PNAS
• Protein Engineering Design and Selection
• Protein Expression and Purification
• Protein Science
• Proteins: Structure, Function, and Genetics
• Science
• Structure
• Trends

Databases

• BMCD
• EcoCyc (E. coli database)
• EXPASY
• HIC-UP
• NCBI - Blast
• NCBI GenBank
• PredictProtein Server (Input_ID)
• Protein Data Bank
• TIGR

Structure Information & Analysis Servers

• CATH (Hierarchical Classification of Protein Domail Structures)
• CCA+ (CD spectrum analyser program)
• CD pro (CD spectrum analyser program)
• CE (Combinational Extension)
• Crystal twinning server
• DALI
• Dichroweb (CD spectrum analyser program)
• DrawCoil 1.0 (helical wheel diagram)
• ERRAT
• HIT (Helix Interaction Tool)
• K2D (CD spectrum analyser program)
• LZ prediction site (Leucine Zipper prediction server)
• PDBsum (Protein Secondary Topology Diagram)
• Phyre (Protein analysis program)
• PQS (Protein Quaternary Structure) Query Server
• PredictProtein (Protein analysis program_Input_ID)
• PROCAT (DB of 3D Enzyme Active Sites)
• Protein Model Assessment Server (Molprobity)
• Protein-Protein Interaction Server
• Protein Secondary Structure
• REFOLD (Refolding protocol)
• Restriction Enzyme Site Analysis
• RHYTHM (Prediction of Helix-Helix contacts)
• SCOP (Structural Classification of Proteins)
• Secondary Structure Superposition
• SER (surface enthropy reduction)
• Similar 3D structures
• Structure Based Sequence Alignment
• The Institute of Enzymolgy
• TOPDOM
• Verify3D (3D-1D plot)

crystallization tip

• structural medicine protein crystallography course
• Bernhard Rupp web
• UPPSALA University
• Xtal-protocols

Crystallography Softwares

• ARP and wARP
• AutoDock
• Automated structure solution (for MIR and MAD)
• BOBSCRIPT manual
• CCP4 Suite
• CNS
• DINO : Visualizing Structural Biology
• DOCK
• GRASP
• HKL package
• MAID (ed fitting)
• MODELLER
• Molray
• MOLMOL
• MOLSCRIPT v2.0
• O (Alwyn Jones homepage)
• O (Morten Kjeldgaard)
• Periodic Tables (scattering factor)
• Phaser
• PREPI v0.9 (alpha release)
• PROCHECK
• PyMOL
• RasMol
• Raster 3D
• RIBBONS
• Scripps Xtal View
• SHARP/autoSHARP
• SHELX
• SINCRIS (Software database for crystallography)
• SOLVE/RESOLVE
• Twinning Detection 　
• Uppsala Software Factory (USF)
• X-PLOR

Synchrotron Facilities

• Advanced Light Source (ALS)
• Advanced Photon Source (APS)
• Australian Synchrotron
• Beijing Synchrotron Radiation Facility (BSRF)
• Deutsches Elektronen-Synchrotron (DESY)
• European Synchrotron Radiation Facility (ESRF)
• National Synchrotron Light Source (NSLS)
• PF (Protein Crystallography)
• Photon Factory (PF)
• Pohang Accelerator Laboratory (PAL)
• Shanghai Synchrotron Radiation Facility (SSRF)
• Spring-8
• Stanford Synchrotron Radiation Lighsource (SSRL)
• Taiwan Photon Source (TPS)

Crystallography related Companies

• Area Detector Systems Corporation (ADSC)
• Hampton Research
• Molecular Structure Corporation
• Oxford Cryosystems
• Rigaku & Emerald Bio

Molecular Biology related Companies

• Agilent Technologies
• Amersham-Pharmacia Biotech
• Amersham-Pharmacia Biotech (Korea)
• ATCC
• ChemNavigator (>2,000,000 compounds)
• Life Technologies
• Merck
• Millipore
• New England Biolab
• Novagen / pET System Manual
• Promega
• Qiagen
• RND
• Roche
• Sigma-Aldrich and Fluka
• Sigma-Aldrich Korea
• Takara Korea

Bioinformatics for Structural Biology

• Coils (Coiled-coil prediction)
• ExPASy tools
• GlobPlot
• NCBI-Conserved Domain
• NCBI GenBank (DNA sequence information)
• NCBI-PDB blast
• NPSA (consensus secondary structure prediction)
• PeptideCutter (Protease site prediction)
• PPCpred (Protein construct design)
• PredictProtein (Secondary structure prediction_Input_ID)
• ProtParam (Physico-chemical parameters of a protein sequence)
• Protein multiple sequence alignment (Identity & homology check)
• ProtScale (Hydrophobicity)
• SignalP (signal peptide prediction)
• TMpred (Prediction of transmembrane regions)
• UniprotKB : Protein information search
• Webcutter (DNA restrictive enzyme site)

ETC.

• BRIC
• KOSEN21
• Pubmed